Restrucure target folder and move creation of boot.bin to c program

Makefile

@@ -1,15 +1,23 @@
-run_bootloader: compile_bootloader
+run: bin
 	qemu-system-i386 -drive format=raw,file=target/boot.bin -monitor stdio
 
-run_kernel: compile_kernel
-	qemu-system-i386 -kernel target/kernel.bin
+clean:
+	rm -r ./target/
+	mkdir -p ./target/helpers
+	mkdir ./target/bootloader
+	mkdir ./target/kernel
 
-compile_bootloader: compile_kernel
-	rm -rf target/bootloader.bin
-	nasm -f bin -o target/bootloader.bin bootloader/main.asm
-	cat target/bootloader.bin target/kernel.bin > target/boot.bin
+bin: compile_bootloader compile_kernel compile_helpers
+	./target/helpers/make_bin
+
+compile_helpers:
+	gcc -o ./target/helpers/make_bin ./helpers/make_bin.c
+
+compile_bootloader:
+	rm -rf target/bootloader/bootloader.bin
+	nasm -f bin -o target/bootloader/bootloader.bin bootloader/main.asm
 
 compile_kernel:
-	nasm -felf32 kernel/boot.asm -o target/boot.o
-	i686-elf-gcc -c kernel/kernel.c -o target/kernel.o -std=gnu99 -ffreestanding -O2 -Wall -Wextra
-	i686-elf-gcc -T kernel/linker.ld -o target/kernel.bin -ffreestanding -O2 -nostdlib target/boot.o target/kernel.o -lgcc
+	nasm -felf32 kernel/wrapper.asm -o target/kernel/wrapper.o
+	i686-elf-gcc -c kernel/kernel.c -o target/kernel/kernel.o -std=gnu99 -ffreestanding -O2 -Wall -Wextra
+	i686-elf-gcc -T kernel/linker.ld -o target/kernel/kernel.bin -ffreestanding -O2 -nostdlib target/kernel/wrapper.o target/kernel/kernel.o -lgcc

helpers/make_bin.c

@@ -0,0 +1,53 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <stdint.h>
+
+#define KERNEL_SECTORS 64
+
+int main(int argc, char** argv) {
+    FILE* result_file = fopen("./target/boot.bin", "w+b");
+
+    FILE* bootloader_file = fopen("./target/bootloader/bootloader.bin", "rb");
+
+    // ------- BOOTLOADER + SFS HEADER -------
+    char* buffer = calloc(512, sizeof(char));
+    int i = 0;
+    int curr_char;
+
+    while ((curr_char = fgetc(bootloader_file)) != EOF) {
+        buffer[i] = (char) curr_char;
+        i++;
+    }
+
+    // TODO edit SFS header
+
+    buffer[0x194] = 0xff;
+
+
+    for (int i = 0; i < 512; i++) {
+        fputc(buffer[i], result_file);
+    }
+
+    fclose(bootloader_file);
+
+
+    // ------- KERNEL -------
+    
+    FILE* kernel_file = fopen("./target/kernel/kernel.bin", "rb");
+
+    int bytes_written = 0;
+
+    while ((curr_char = fgetc(kernel_file)) != EOF) {
+        fputc((char) curr_char, result_file);
+        bytes_written++;
+    }
+
+    for (; bytes_written < KERNEL_SECTORS * 512; bytes_written++) {
+        fputc(0, result_file);
+    }
+
+
+    fclose(result_file);
+
+    return EXIT_SUCCESS;
+}